PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG400200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 184aa    MW: 21492.4 Da    PI: 9.9156
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG400200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.91.6e-1830121190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                          +f+n++A++ GFs+rk k ++  +++ i +r++ Csk g r+++    ++k+rr+r++tr +C  ++++k ++  ++ +v+k    HnH 
  Pavir.5NG400200.1.p  30 EFFNAFARNKGFSLRKGKVTRAPNKDDISSRQYLCSKAGARQPKFLImEDKKRRPRPVTRFECPFEVVIKHNSeGNVRYVHKYIDTHNHV 119
                          6*********************99999***************98765578999********************888899**********8 PP

                 FAR1  89 la 90 
                          +a
  Pavir.5NG400200.1.p 120 MA 121
                          76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-1630120IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MSAPTQTLEE LAEYEYIVEK TFLSEDNGYE FFNAFARNKG FSLRKGKVTR APNKDDISSR  60
QYLCSKAGAR QPKFLIMEDK KRRPRPVTRF ECPFEVVIKH NSEGNVRYVH KYIDTHNHVM  120
ARSSEIGFLF SHRRISERQK KEILAYQTAG LRKYQIMDVL EQRYGGPHNV GHVTKDLYNF  180
SYI*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK3ZL919e-79K3ZL91_SETIT; Uncharacterized protein
STRINGSi027347m3e-78(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-18FAR1-related sequence 5